scarcc

Basic Setup

  • 1. Harcombe Lab Mutualism Model Setup
  • 2. Modifying E.coli Carbon Byproduct Secretion Profile
  • 3. Preparing Single Gene Target and Double Gene Combinations
  • 4. Stoichiometry Scaling

Simulation Procedures

  • 1. Deriving Alpha Table from FBA
  • 2. Simulation Workflow
  • 3. Checkerboard simulation

Data Analysis

  • 1. Preprocessing Flux Data for Plots
  • 2. Checkerboard plots
  • 3. Analyzing carbon allocation profile
scarcc
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